MolNFT v1 · #26765 · protein

The crystal structure of plant ATG12

1WZ3 · Autophagy 12B: “The crystal structure of plant ATG12”. X-ray diffraction, 1 pocket (best druggability 0.61). MolNFT v1 #26765 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1WZ3
Type: protein
Length: 168 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Autophagy 12B
UniProt: Q9LVK3
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Autophagy 12B	protein	84	23% helix, 37% strand	Q9LVK3

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	391	0.61	0.76	40	empty

Interfaces

1 interface between chains.

A–B · 2991 Å² buried · 61 hydrogen bonds · protein-protein

Compared structures

1WZ3 · The crystal structure of plant ATG12 · the same entry in another collection · chain A against A, TM-score 1.00
Q9LVK3 · AlphaFold monomer V2.0 prediction for ubiquitin-like protein ATG12B (Q9LVK3) · a predicted model of the same protein · chain A against A, TM-score 0.58

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LVK3
Elsewhere: RCSB PDB 1WZ3 · PDBe 1WZ3 · UniProt Q9LVK3

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