MolNFT v1 · #26628 · protein
Crystal structure of N-terminal domain of hypothetical protein SAV0287 from staphylococcus aureus
1WV3 · Similar to DNA segregation ATPase and related proteins: “Crystal structure of N-terminal domain of hypothetical protein SAV0287 from staphylococcus aureus”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.31). MolNFT…
- PDB
- 1WV3
- Type
- protein
- Length
- 186 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Similar to DNA segregation ATPase and related proteins
- UniProt
- Q8NYF3
- Ligands
- CL
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Similar to DNA segregation ATPase and related proteins | protein | 186 | 5% helix, 48% strand | Q8NYF3 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.31 | 0.74 | 19 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 1WV3 · Crystal structure of N-terminal domain of hypothetical protein SAV0287 from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8NYF3 · AlphaFold monomer V2.0 prediction for type VII secretion system protein essc (Q8NYF3) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NYF3
- Elsewhere: RCSB PDB 1WV3 · PDBe 1WV3 · UniProt Q8NYF3
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