MolNFT v1 · #2646 · RNA
5S rRNA structure fitted to a cryo-electron microscopic MAP at 7.5 ångströms resolution
1C2X · 5S ribosomal RNA: “5S rRNA structure fitted to a cryo-electron microscopic MAP at 7.5 ångströms resolution”. Electron microscopy, 4 pockets (best druggability 0.81). MolNFT v1 #2646 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1C2X
- Type
- RNA
- Length
- 120 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5S ribosomal RNA
- Pockets
- 4 · best druggability 0.81
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | 5S ribosomal RNA | rna | 120 | — | — |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 682 | 0.81 | 0.86 | 40 | empty |
| 2 | 388 | 0.59 | 0.77 | 22 | empty |
| 3 | 138 | 0.37 | 0.73 | 13 | empty |
| 4 | 53 | 0.37 | 0.81 | 10 | empty |
Compared structures
- 1C2X · 5S rRNA structure fitted to a cryo-electron microscopic MAP at 7.5 ångströms resolution · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1C2X · PDBe 1C2X
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