MolNFT v1 · #26423 · protein
Crystal structure of human phosphodiesterase
1WOJ · 2',3'-cyclic-nucleotide 3'-phosphodiesterase: “Crystal structure of human phosphodiesterase”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.50). MolNFT v1 #26423 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1WOJ
- Type
- protein
- Length
- 209 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2',3'-cyclic-nucleotide 3'-phosphodiesterase
- EC
- 3.1.4.37
- UniProt
- P09543
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2',3'-cyclic-nucleotide 3'-phosphodiesterase (EC 3.1.4.37) | protein | 209 | 32% helix, 33% strand | P09543 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 177 | 0.50 | 0.77 | 30 | PO4 |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P09543
- Elsewhere: RCSB PDB 1WOJ · PDBe 1WOJ · UniProt P09543
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