MolNFT v1 · #2641 · DNA + RNA
Solution structure of a DNA.RNA hybrid containing an alphat-anomeric thymidine and polarity reversals
1C2Q · 5'-D(ATGG-3'-3'-(T3P)-5'-5'-gctc)-3': “Solution structure of a DNA.RNA hybrid containing an alphat-anomeric thymidine and polarity reversals”. Solution nmr. MolNFT v1 #2641 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1C2Q
- Type
- DNA + RNA
- Length
- 18 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(ATGG-3'-3'-(T3P)-5'-5'-gctc)-3'; 5'-R(GAGCACCAU)-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(ATGG-3'-3'-(T3P)-5'-5'-gctc)-3' | dna | 9 | — | — |
| B | 5'-R(GAGCACCAU)-3' | rna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 410 Ų buried · 42 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 1C2Q · Solution structure of a DNA.RNA hybrid containing an alphat-anomeric thymidine and… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1C2Q · PDBe 1C2Q
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