MolNFT v1 · #26312 · protein

Structure of aminopeptidase P from E. COLI

1WL9 · Xaa-pro aminopeptidase: “Structure of aminopeptidase P from E. COLI”. X-ray diffraction, 2 ligands (MN, CL), 3 pockets (best druggability 0.51). MolNFT v1 #26312 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1WL9
Type: protein
Length: 440 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Xaa-pro aminopeptidase
EC: 3.4.11.9
UniProt: P15034
Ligands: MN, CL
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Xaa-pro aminopeptidase (EC 3.4.11.9)	protein	440	42% helix, 19% strand	P15034

Ligands and binding sites

MN · Manganese (II) ion · metal · 2 copies · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	219	0.51	0.76	30	empty
2	97	0.44	0.79	19	empty
3	62	0.30	0.75	15	empty

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

1WL9 · Structure of aminopeptidase P from E. coli · the same entry in another collection · chain A against A, TM-score 1.00
P15034 · AlphaFold monomer V2.0 prediction for xaa-pro aminopeptidase (P15034) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P15034
Elsewhere: RCSB PDB 1WL9 · PDBe 1WL9 · UniProt P15034

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