MolNFT v1 · #26292 · protein
Flowering locus T (ft) from arabidopsis thaliana
1WKP · Flowering locus T protein: “Flowering locus T (ft) from arabidopsis thaliana”. X-ray diffraction, 1 ligand (SO4), 10 pockets (best druggability 0.76). MolNFT v1 #26292 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1WKP
- Type
- protein
- Length
- 649 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flowering locus T protein
- UniProt
- Q9SXZ2
- Ligands
- SO4
- Pockets
- 10 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 13% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Flowering locus T protein | protein | 163 | 13% helix, 34% strand | Q9SXZ2 |
| B, C, D | Flowering locus T protein | protein | 162 | 13% helix, 35% strand | Q9SXZ2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.76 | 0.97 | 26 | SO4 |
| 2 | 91 | 0.76 | 0.98 | 26 | SO4 |
| 3 | 309 | 0.55 | 0.75 | 45 | empty |
| 4 | 187 | 0.45 | 0.74 | 27 | empty |
| 5 | 89 | 0.43 | 0.79 | 18 | empty |
Interfaces
3 interfaces between chains.
- B–C · 869 Ų buried · 22 hydrogen bonds · protein-protein
- A–D · 865 Ų buried · 17 hydrogen bonds · protein-protein
- B–D · 538 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SXZ2
- Elsewhere: RCSB PDB 1WKP · PDBe 1WKP · UniProt Q9SXZ2
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