MolNFT v1 · #26216 · protein

Solution structure of the B3 DNA-binding domain of RAV1

1WID · DNA-binding protein RAV1: “Solution structure of the B3 DNA-binding domain of RAV1”. Solution nmr, 1 pocket (best druggability 0.46). MolNFT v1 #26216 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1WID
Type: protein
Length: 117 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA-binding protein RAV1
UniProt: Q9ZWM9
Pockets: 1 · best druggability 0.46

Structure

solution nmr · 1 distinct chain · 9% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA-binding protein RAV1	protein	117	9% helix, 38% strand	Q9ZWM9

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.46	0.77	25	empty

Compared structures

1WID · Solution Structure of the B3 DNA-Binding Domain of RAV1 · the same entry in another collection · chain A against A, TM-score 1.00
Q9ZWM9 · AlphaFold monomer V2.0 prediction for AP2/ERF and B3 domain- containing transcription… · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZWM9
Elsewhere: RCSB PDB 1WID · PDBe 1WID · UniProt Q9ZWM9

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