MolNFT v1 · #26131 · protein
Crystal structure of APE0204 from aeropyrum pernix
1WFX · Probable RNA 2'-phosphotransferase: “Crystal structure of APE0204 from aeropyrum pernix”. X-ray diffraction, 2 ligands (ZN, CL), 2 pockets (best druggability 0.61). MolNFT v1 #26131 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1WFX
- Type
- protein
- Length
- 180 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable RNA 2'-phosphotransferase
- EC
- 2.7.-.-
- UniProt
- Q9YFP5
- Ligands
- ZN, CL
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable RNA 2'-phosphotransferase (EC 2.7.-.-) | protein | 180 | 33% helix, 22% strand | Q9YFP5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 386 | 0.61 | 0.77 | 38 | CL |
| 2 | 67 | 0.45 | 0.83 | 16 | empty |
Modifications
Observed in the structure: 3 modified, 1 disulfide (engineered, disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9YFP5
- Elsewhere: RCSB PDB 1WFX · PDBe 1WFX · UniProt Q9YFP5
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