MolNFT v1 · #26056 · protein
Glutamine-binding protein
1WDN · Glutamine binding protein: “Glutamine-binding protein”. X-ray diffraction, 1 ligand (GLN), 2 pockets (best druggability 0.53). MolNFT v1 #26056 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1WDN
- Type
- protein
- Length
- 223 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamine binding protein
- UniProt
- P10344
- Ligands
- GLN
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamine binding protein | protein | 223 | 35% helix, 32% strand | P10344 |
Ligands and binding sites
- GLN · Glutamine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.53 | 0.87 | 21 | GLN |
| 2 | 52 | 0.33 | 0.77 | 13 | empty |
Compared structures
- 1WDN · Glutamine-binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P10344
- Elsewhere: RCSB PDB 1WDN · PDBe 1WDN · UniProt P10344
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