MolNFT v1 · #26052 · protein

Crystal structure of TT1808 from thermus thermophilus HB8

1WDJ · Hypothetical protein TT1808: “Crystal structure of TT1808 from thermus thermophilus HB8”. X-ray diffraction, 5 pockets (best druggability 0.78). MolNFT v1 #26052 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1WDJ
Type: protein
Length: 524 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein TT1808
UniProt: Q5SI60
Pockets: 5 · best druggability 0.78

Structure

x-ray diffraction · 2 distinct chains · 31% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	Hypothetical protein TT1808	protein	186	31% helix, 28% strand	Q5SI60
B	Hypothetical protein TT1808	protein	152	31% helix, 26% strand	Q5SI60

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	843	0.78	0.81	101	empty
2	239	0.71	0.87	39	empty
3	114	0.51	0.81	21	empty
4	128	0.43	0.76	17	empty
5	98	0.36	0.75	16	empty

Interfaces

3 interfaces between chains.

A–B · 1743 Å² buried · 31 hydrogen bonds · protein-protein
A–C · 633 Å² buried · 7 hydrogen bonds · protein-protein
B–C · 123 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

1WDJ · Crystal structure of TT1808 from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SI60
Elsewhere: RCSB PDB 1WDJ · PDBe 1WDJ · UniProt Q5SI60

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