MolNFT v1 · #26049 · protein

Crystal structure of mhv spike protein fusion core

1WDF · E2 glycoprotein: “Crystal structure of mhv spike protein fusion core”. X-ray diffraction, 1 pocket (best druggability 0.50). MolNFT v1 #26049 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1WDF
Type: protein
Length: 184 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: E2 glycoprotein
UniProt: P11224
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 2 distinct chains · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	E2 glycoprotein	protein	91	73% helix, 0% strand	P11224
B	E2 glycoprotein	protein	93	73% helix, 0% strand	P11224

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	210	0.50	0.76	25	empty

Interfaces

1 interface between chains.

A–B · 378 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

1WDF · crystal structure of MHV spike protein fusion core · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P11224
Elsewhere: RCSB PDB 1WDF · PDBe 1WDF · UniProt P11224

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