MolNFT v1 · #26048 · protein
Crystal structure of the conserved hypothetical protein APE0931 from aeropyrum pernix K1
1WDE · Probable diphthine synthase: “Crystal structure of the conserved hypothetical protein APE0931 from aeropyrum pernix K1”. X-ray diffraction, 1 pocket (best druggability 0.64). MolNFT v1 #26048 on GenesisL1: 3D structure, binding…
- PDB
- 1WDE
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable diphthine synthase
- EC
- 2.1.1.98
- UniProt
- Q9YDI2
- Pockets
- 1 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable diphthine synthase (EC 2.1.1.98) | protein | 289 | 41% helix, 19% strand | Q9YDI2 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.64 | 0.83 | 36 | empty |
Modifications
Observed in the structure: 5 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 1WDE · Crystal structure of the conserved hypothetical protein APE0931 from Aeropyrum pernix K1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9YDI2 · AlphaFold monomer V2.0 prediction for diphthine synthase (Q9YDI2) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9YDI2
- Elsewhere: RCSB PDB 1WDE · PDBe 1WDE · UniProt Q9YDI2
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