MolNFT v1 · #26013 · protein
Crystal structure of ibdv T1 virus-like particle reveals a missing link in icosahedral viruses evolution
1WCD · Major structural protein VP2: “Crystal structure of ibdv T1 virus-like particle reveals a missing link in icosahedral viruses evolution”. X-ray diffraction, 4 pockets (best druggability 0.73). MolNFT v1 #26013 on GenesisL1: 3D…
- PDB
- 1WCD
- Type
- protein
- Length
- 421 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major structural protein VP2
- UniProt
- P15480
- Pockets
- 4 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| J | Major structural protein VP2 | protein | 421 | 10% helix, 45% strand | P15480 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.73 | 0.98 | 21 | empty |
| 2 | 194 | 0.63 | 0.83 | 36 | empty |
| 3 | 207 | 0.53 | 0.78 | 43 | empty |
| 4 | 133 | 0.46 | 0.78 | 21 | empty |
Compared structures
- 1WCD · Crystal structure of IBDV T1 virus-like particle reveals a missing link in icosahedral… · the same entry in another collection · chain J against J, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15480
- Elsewhere: RCSB PDB 1WCD · PDBe 1WCD · UniProt P15480
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