MolNFT v1 · #25885 · protein
Crystal structure of apical membrane antigen 1 from plasmodium vivax
1W8K: “Crystal structure of apical membrane antigen 1 from plasmodium vivax”. X-ray diffraction, 2 pockets (best druggability 0.41). MolNFT v1 #25885 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1W8K
- Type
- protein
- Length
- 362 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apical membrane antigen 1
- UniProt
- Q9TY14
- Pockets
- 2 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apical membrane antigen 1 | protein | 362 | 20% helix, 29% strand | Q9TY14 |
Ligands and binding sites
- IMD · Imidazole · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.41 | 0.79 | 18 | empty |
| 2 | 74 | 0.30 | 0.73 | 19 | empty |
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 1W8K · Crystal structure of apical membrane antigen 1 from Plasmodium vivax · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9TY14
- Elsewhere: RCSB PDB 1W8K · PDBe 1W8K · UniProt Q9TY14
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