MolNFT v1 · #25856 · protein
Feglymycin P65 crystal form
1W7Q: “Feglymycin P65 crystal form”. X-ray diffraction. MolNFT v1 #25856 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1W7Q
- Type
- protein
- Length
- 78 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Feglymycin
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 85% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Feglymycin | protein | 13 | 0% helix, 85% strand | — |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 37 copies · chains A, B, C, F, D, E
- EOH · Ethanol · additive · 5 copies · chains A, B, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
8 interfaces between chains.
- A–B · 1075 Ų buried · 33 hydrogen bonds · protein-protein
- D–E · 1074 Ų buried · 35 hydrogen bonds · protein-protein
- C–F · 1070 Ų buried · 33 hydrogen bonds · protein-protein
- B–C · 305 Ų buried · 8 hydrogen bonds · protein-protein
- E–F · 224 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 54 modified (nonstandard).
Compared structures
- 1W7Q · Feglymycin P65 crystal form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1W7Q · PDBe 1W7Q
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