MolNFT v1 · #25854 · protein
Cytochrome C3 from desulfomicrobium baculatus
1W7O: “Cytochrome C3 from desulfomicrobium baculatus”. X-ray diffraction, 1 ligand (HEC), 1 pocket (best druggability 0.76). MolNFT v1 #25854 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1W7O
- Type
- protein
- Length
- 118 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C3
- UniProt
- Q6XCI5
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C3 | protein | 118 | 25% helix, 7% strand | Q6XCI5 |
Ligands and binding sites
- HEC · Heme C · ligand · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 657 | 0.76 | 0.82 | 70 | HEC |
Modifications
Observed in the structure: 8 cofactor (heme c attachment).
Compared structures
- 1W7O · cytochrome c3 from Desulfomicrobium baculatus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6XCI5
- Elsewhere: RCSB PDB 1W7O · PDBe 1W7O · UniProt Q6XCI5
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