MolNFT v1 · #25725 · protein
Crystal structure of phosphoserine aminotransferase from bacillus circulans var. alkalophilus
1W3U: “Crystal structure of phosphoserine aminotransferase from bacillus circulans var. alkalophilus”. X-ray diffraction, 1 ligand (PLP), 2 pockets (best druggability 0.38). MolNFT v1 #25725 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1W3U
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoserine aminotransferase
- EC
- 2.6.1.52
- UniProt
- Q59196
- Ligands
- PLP
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoserine aminotransferase (EC 2.6.1.52) | protein | 360 | 41% helix, 17% strand | Q59196 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.38 | 0.77 | 13 | empty |
| 2 | 108 | 0.37 | 0.74 | 26 | empty |
Modifications
Observed in the structure: 1 cofactor (pyridoxal phosphate Schiff base).
Compared structures
- 1W3U · Crystal structure of phosphoserine aminotransferase from Bacillus circulans var.… · the same entry in another collection · chain A against A, TM-score 1.00
- Q59196 · AlphaFold monomer V2.0 prediction for phosphoserine aminotransferase (Q59196) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59196
- Elsewhere: RCSB PDB 1W3U · PDBe 1W3U · UniProt Q59196
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