MolNFT v1 · #25723 · protein

The crystal structure of reco from deinococcus radiodurans.

1W3S · Hypothetical protein DR0819: “The crystal structure of reco from deinococcus radiodurans.”. X-ray diffraction, 1 ligand (ZN), 4 pockets (best druggability 0.66). MolNFT v1 #25723 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 1W3S
Type: protein
Length: 461 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein DR0819
UniProt: Q9RW50
Ligands: ZN
Pockets: 4 · best druggability 0.66

Structure

x-ray diffraction · 2 distinct chains · 38% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein DR0819	protein	230	37% helix, 21% strand	Q9RW50
B	Hypothetical protein DR0819	protein	231	39% helix, 22% strand	Q9RW50

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	459	0.66	0.78	53	empty
2	131	0.39	0.74	19	empty
3	87	0.37	0.76	18	empty
4	65	0.29	0.73	18	empty

Interfaces

1 interface between chains.

A–B · 854 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

1W3S · The crystal structure of RecO from Deinococcus radiodurans. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RW50
Elsewhere: RCSB PDB 1W3S · PDBe 1W3S · UniProt Q9RW50

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