MolNFT v1 · #25681 · protein
Cytochrome C domain of CAA3 oxygen oxidoreductase
1W2L · Cytochrome oxidase subunit II: “Cytochrome C domain of CAA3 oxygen oxidoreductase”. X-ray diffraction, 1 ligand (HEC), 1 pocket (best druggability 0.80). MolNFT v1 #25681 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1W2L
- Type
- protein
- Length
- 97 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome oxidase subunit II
- EC
- 1.9.3.1
- UniProt
- Q9F3S9
- Ligands
- HEC
- Pockets
- 1 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome oxidase subunit II (EC 1.9.3.1) | protein | 97 | 41% helix, 8% strand | Q9F3S9 |
Ligands and binding sites
- HEC · Heme C · ligand · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.80 | 0.93 | 36 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 1W2L · Cytochrome c domain of caa3 oxygen oxidoreductase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9F3S9
- Elsewhere: RCSB PDB 1W2L · PDBe 1W2L · UniProt Q9F3S9
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