MolNFT v1 · #25500 · RNA
Three-dimensional structure of yeast T-RNA-asp. I. structure determination
1VTQ: “Three-dimensional structure of yeast T-RNA-asp. I. structure determination”. X-ray diffraction, 3 pockets (best druggability 0.65). MolNFT v1 #25500 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1VTQ
- Type
- RNA
- Length
- 75 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- T-RNA-asp
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | T-RNA-asp | rna | 75 | — | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 685 | 0.65 | 0.75 | 31 | empty |
| 2 | 245 | 0.49 | 0.75 | 19 | empty |
| 3 | 134 | 0.43 | 0.76 | 14 | empty |
Modifications
Observed in the structure: 8 modified (nucleotide modification).
Compared structures
- 1VTQ · Three-dimensional structure of yeast T-RNA-asp. I. structure determination · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1VTQ · PDBe 1VTQ
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