MolNFT v1 · #25475 · protein

Very short patch repair (vsr) endonuclease from escherichia COLI

1VSR · Protein (vsr endonuclease): “Very short patch repair (vsr) endonuclease from escherichia COLI”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.37). MolNFT v1 #25475 on GenesisL1: 3D structure, binding sites and…

PDB: 1VSR
Type: protein
Length: 134 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (vsr endonuclease)
EC: 3.1.-.-
UniProt: P09184
Ligands: ZN
Pockets: 2 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (vsr endonuclease) (EC 3.1.-.-)	protein	134	40% helix, 19% strand	P09184

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.37	0.77	12	empty
2	87	0.34	0.74	22	empty

Compared structures

1VSR · Very short patch repair (vsr) endonuclease from escherichia COLI · the same entry in another collection · chain A against A, TM-score 1.00
P09184 · AlphaFold monomer V2.0 prediction for very short patch repair protein (P09184) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P09184
Elsewhere: RCSB PDB 1VSR · PDBe 1VSR · UniProt P09184

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