MolNFT v1 · #25377 · protein
Crystal structure of a luciferase domain from the dinoflagellate lingulodinium polyedrum
1VPR: “Crystal structure of a luciferase domain from the dinoflagellate lingulodinium polyedrum”. X-ray diffraction, 2 pockets (best druggability 0.45). MolNFT v1 #25377 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1VPR
- Type
- protein
- Length
- 351 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Luciferase
- UniProt
- O77206
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Luciferase | protein | 351 | 20% helix, 29% strand | O77206 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.45 | 0.78 | 30 | empty |
| 2 | 87 | 0.44 | 0.80 | 23 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 1VPR · Crystal structure of a luciferase domain from the dinoflagellate Lingulodinium polyedrum · the same entry in another collection · chain A against A, TM-score 1.00
- O77206 · AlphaFold monomer V2.0 prediction for dinoflagellate luciferase (O77206) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O77206
- Elsewhere: RCSB PDB 1VPR · PDBe 1VPR · UniProt O77206
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