MolNFT v1 · #25360 · protein
Crystal structure of an ALPHA/BETA domain of a putative pyruvate kinase (AF0103) from archaeoglobus fulgidus dsm 4304 at 1.30 a resolution
1VP8 · Hypothetical protein AF0103: “Crystal structure of an ALPHA/BETA domain of a putative pyruvate kinase (AF0103) from archaeoglobus fulgidus…”. X-ray diffraction, 2 ligands (FMN, UNL), 2 pockets (best druggability 0.67). MolNFT v1…
- PDB
- 1VP8
- Type
- protein
- Length
- 190 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein AF0103
- UniProt
- O30133
- Ligands
- FMN, UNL
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein AF0103 | protein | 190 | 39% helix, 20% strand | O30133 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.67 | 0.87 | 29 | FMN, UNL |
| 2 | 56 | 0.29 | 0.74 | 14 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 1VP8 · CRYSTAL STRUCTURE OF an alpha/beta domain of a putative pyruvate kinase (AF0103) FROM… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O30133
- Elsewhere: RCSB PDB 1VP8 · PDBe 1VP8 · UniProt O30133
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