MolNFT v1 · #25288 · protein
Crystal structure of a putative methyltransferase (BH2331) from bacillus halodurans C-125 at 1.95 a resolution
1VL5 · Unknown conserved protein BH2331: “Crystal structure of a putative methyltransferase (BH2331) from bacillus halodurans C-125 at 1.95 a resolution”. X-ray diffraction, 10 pockets (best druggability 0.64). MolNFT v1 #25288 on…
- PDB
- 1VL5
- Type
- protein
- Length
- 906 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Unknown conserved protein BH2331
- UniProt
- Q9KAF6
- Pockets
- 10 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | Unknown conserved protein BH2331 | protein | 231 | 41% helix, 30% strand | Q9KAF6 |
| C | Unknown conserved protein BH2331 | protein | 213 | 38% helix, 32% strand | Q9KAF6 |
Pockets
10 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 123 | 0.64 | 0.88 | 24 | empty |
| 2 | 113 | 0.59 | 0.85 | 25 | empty |
| 3 | 288 | 0.54 | 0.76 | 44 | empty |
| 4 | 295 | 0.54 | 0.75 | 44 | empty |
| 5 | 240 | 0.52 | 0.76 | 35 | empty |
Interfaces
2 interfaces between chains.
- A–B · 916 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 864 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 20 modified (engineered).
Compared structures
- 1VL5 · Crystal structure of a putative methyltransferase (BH2331) from bacillus halodurans C-125… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KAF6
- Elsewhere: RCSB PDB 1VL5 · PDBe 1VL5 · UniProt Q9KAF6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.