MolNFT v1 · #25258 · protein

Crystal structure of a DUF1893 family protein (TM1506) from thermotoga maritima at 2.70 a resolution

1VK9 · Conserved hypothetical protein TM1506: “Crystal structure of a DUF1893 family protein (TM1506) from thermotoga maritima at 2.70 a resolution”. X-ray diffraction, 2 ligands (UNL, ZN), 2 pockets (best druggability 0.52). MolNFT v1…

PDB: 1VK9
Type: protein
Length: 147 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Conserved hypothetical protein TM1506
UniProt: Q9X1J4
Ligands: UNL, ZN
Pockets: 2 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Conserved hypothetical protein TM1506	protein	147	39% helix, 22% strand	Q9X1J4

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
ZN · Zinc ion · metal · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	131	0.52	0.81	26	UNL
2	73	0.38	0.78	14	empty

Modifications

Observed in the structure: 5 modified, 1 covalent (engineered, covalent ligand).

Compared structures

1VK9 · CRYSTAL STRUCTURE OF A DUF1893 family protein (TM1506) FROM THERMOTOGA MARITIMA AT 2.70 A… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X1J4
Elsewhere: RCSB PDB 1VK9 · PDBe 1VK9 · UniProt Q9X1J4

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