MolNFT v1 · #25255 · protein

X-ray structure of gene product from arabidopsis thaliana AT3G22680

1VK5 · Expressed protein: “X-ray structure of gene product from arabidopsis thaliana AT3G22680”. X-ray diffraction, 2 ligands (CPS, SO4). MolNFT v1 #25255 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1VK5
Type: protein
Length: 121 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Expressed protein
UniProt: Q9LUJ3
Ligands: CPS, SO4

Structure

x-ray diffraction · 1 distinct chain · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Expressed protein	protein	121	57% helix, 0% strand	Q9LUJ3

Ligands and binding sites

CPS · 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate · ligand · chains A
SO4 · Sulfate ion · ion · 3 copies · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

1VK5 · X-ray Structure of Gene Product from Arabidopsis Thaliana At3g22680 · the same entry in another collection · chain A against A, TM-score 1.00
Q9LUJ3 · AlphaFold monomer V2.0 prediction for protein RDM1 (Q9LUJ3) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LUJ3
Elsewhere: RCSB PDB 1VK5 · PDBe 1VK5 · UniProt Q9LUJ3

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