MolNFT v1 · #25234 · protein
Gene product of AT1G76680 from arabidopsis thaliana
1VJI · 12-oxophytodienoate reductase (OPR1): “Gene product of AT1G76680 from arabidopsis thaliana”. X-ray diffraction, 1 ligand (FMN), 2 pockets (best druggability 0.66). MolNFT v1 #25234 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1VJI
- Type
- protein
- Length
- 351 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 12-oxophytodienoate reductase (OPR1)
- UniProt
- Q8LAH7
- Ligands
- FMN
- Pockets
- 2 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 12-oxophytodienoate reductase (OPR1) | protein | 351 | 36% helix, 15% strand | Q8LAH7 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 394 | 0.66 | 0.79 | 36 | FMN |
| 2 | 67 | 0.33 | 0.76 | 14 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8LAH7
- Elsewhere: RCSB PDB 1VJI · PDBe 1VJI · UniProt Q8LAH7
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