MolNFT v1 · #25233 · protein
Crystal structure of gene product of AT1G24000 from arabidopsis thaliana
1VJH · Bet V I allergen family: “Crystal structure of gene product of AT1G24000 from arabidopsis thaliana”. X-ray diffraction, 4 pockets (best druggability 0.53). MolNFT v1 #25233 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 1VJH
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bet V I allergen family
- UniProt
- Q9LR93
- Pockets
- 4 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Bet V I allergen family | protein | 120 | 28% helix, 40% strand | Q9LR93 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.53 | 0.79 | 23 | empty |
| 2 | 134 | 0.53 | 0.80 | 21 | empty |
| 3 | 132 | 0.39 | 0.74 | 27 | empty |
| 4 | 77 | 0.32 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 465 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 1VJH · Crystal structure of gene product of At1g24000 from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LR93
- Elsewhere: RCSB PDB 1VJH · PDBe 1VJH · UniProt Q9LR93
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