MolNFT v1 · #25221 · DNA

Sequence-dependent conformation of an a-DNA double helix: the crystal structure of the octamer D(G-G-T-a-T-a-C-C)

1VJ4 · 5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3': “Sequence-dependent conformation of an a-DNA double helix: the crystal structure of the octamer…”. X-ray diffraction. MolNFT v1 #25221 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1VJ4
Type: DNA
Length: 16 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3'

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(GPGPTPAPTPAPCPC)-3'	dna	8	—	—

Interfaces

1 interface between chains.

A–B · 377 Å² buried · 34 hydrogen bonds · nucleic-nucleic

Compared structures

1VJ4 · Sequence-dependent conformation of an a-DNA double helix: the crystal structure of the… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1VJ4 · PDBe 1VJ4

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