MolNFT v1 · #25216 · protein

Crystal structure of an hypothetical protein

1VIZ · Pcrb protein homolog: “Crystal structure of an hypothetical protein”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.82). MolNFT v1 #25216 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1VIZ
Type: protein
Length: 445 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pcrb protein homolog
UniProt: O34790
Ligands: NA
Pockets: 1 · best druggability 0.82

Structure

x-ray diffraction · 2 distinct chains · 41% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pcrb protein homolog	protein	225	41% helix, 20% strand	O34790
B	Pcrb protein homolog	protein	220	40% helix, 20% strand	O34790

Ligands and binding sites

NA · Sodium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1054	0.82	0.83	114	empty

Interfaces

1 interface between chains.

A–B · 441 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

1VIZ · Crystal structure of an hypothetical protein · the same entry in another collection · chain A against A, TM-score 1.00
O34790 · AlphaFold monomer V2.0 prediction for heptaprenylglyceryl phosphate synthase (O34790) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O34790
Elsewhere: RCSB PDB 1VIZ · PDBe 1VIZ · UniProt O34790

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