MolNFT v1 · #25212 · protein
Crystal structure of a hypothetical protein
1VIV · Hypothetical protein yckf: “Crystal structure of a hypothetical protein”. X-ray diffraction, 5 pockets (best druggability 0.51). MolNFT v1 #25212 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1VIV
- Type
- protein
- Length
- 361 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein yckf
- UniProt
- P42404
- Pockets
- 5 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein yckf | protein | 184 | 49% helix, 12% strand | P42404 |
| B | Hypothetical protein yckf | protein | 177 | 49% helix, 12% strand | P42404 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 261 | 0.51 | 0.75 | 33 | empty |
| 2 | 138 | 0.41 | 0.75 | 28 | empty |
| 3 | 77 | 0.37 | 0.76 | 13 | empty |
| 4 | 77 | 0.35 | 0.75 | 14 | empty |
| 5 | 51 | 0.27 | 0.74 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 2134 Ų buried · 38 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42404
- Elsewhere: RCSB PDB 1VIV · PDBe 1VIV · UniProt P42404
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