MolNFT v1 · #25149 · protein
Crystal structure of a autoinducer-2 synthesis protein
1VH2 · S-ribosylhomocysteinase: “Crystal structure of a autoinducer-2 synthesis protein”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.28). MolNFT v1 #25149 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1VH2
- Type
- protein
- Length
- 152 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S-ribosylhomocysteinase
- EC
- 3.13.1.-
- UniProt
- Q9RRU8
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.28
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | S-ribosylhomocysteinase (EC 3.13.1.-) | protein | 152 | 32% helix, 22% strand | Q9RRU8 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.28 | 0.74 | 17 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RRU8
- Elsewhere: RCSB PDB 1VH2 · PDBe 1VH2 · UniProt Q9RRU8
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