MolNFT v1 · #25087 · protein

The crystal structure of YM1 at 1.31 a resolution

1VF8 · Secretory protein: “The crystal structure of YM1 at 1.31 a resolution”. X-ray diffraction, 1 pocket (best druggability 0.65). MolNFT v1 #25087 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1VF8
Type: protein
Length: 373 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Secretory protein
UniProt: O35744
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Secretory protein	protein	373	38% helix, 23% strand	O35744

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	457	0.65	0.77	51	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1VF8 · The Crystal Structure of Ym1 at 1.31 A Resolution · the same entry in another collection · chain A against A, TM-score 1.00
O35744 · AlphaFold monomer V2.0 prediction for chitinase-like protein 3 (O35744) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O35744
Elsewhere: RCSB PDB 1VF8 · PDBe 1VF8 · UniProt O35744

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