MolNFT v1 · #2505 · protein
Structure of apo-dethiobiotin synthase at 0.97 ångströms resolution
1BYI: “Structure of apo-dethiobiotin synthase at 0.97 ångströms resolution”. X-ray diffraction, 2 pockets (best druggability 0.51). MolNFT v1 #2505 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1BYI
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dethiobiotin synthase
- EC
- 6.3.3.3
- UniProt
- P13000
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dethiobiotin synthase (EC 6.3.3.3) | protein | 224 | 38% helix, 21% strand | P13000 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 248 | 0.51 | 0.75 | 45 | empty |
| 2 | 52 | 0.32 | 0.77 | 15 | empty |
Compared structures
- 1BYI · Structure of apo-dethiobiotin synthase at 0.97 ångströms resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P13000 · AlphaFold monomer V2.0 prediction for ATP-dependent dethiobiotin synthetase biod 1… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13000
- Elsewhere: RCSB PDB 1BYI · PDBe 1BYI · UniProt P13000
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.