MolNFT v1 · #25040 · protein

A hypothetical protein PH1897 from pyrococcus horikoshii with similarities for inositol-1 monophosphatase

1VDW: “A hypothetical protein PH1897 from pyrococcus horikoshii with similarities for inositol-1 monophosphatase”. X-ray diffraction, 3 pockets (best druggability 0.81). MolNFT v1 #25040 on GenesisL1: 3D structure, binding sites and…

PDB: 1VDW
Type: protein
Length: 496 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein PH1897
UniProt: O59523
Pockets: 3 · best druggability 0.81

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein PH1897	protein	248	35% helix, 32% strand	O59523
B	Hypothetical protein PH1897	protein	248	33% helix, 31% strand	O59523

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 7 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1113	0.81	0.82	113	EDO
2	102	0.33	0.73	18	empty
3	54	0.30	0.76	14	EDO

Interfaces

1 interface between chains.

A–B · 1248 Å² buried · 27 hydrogen bonds · protein-protein

Compared structures

1VDW · A hypothetical protein PH1897 from Pyrococcus horikoshii with similarities for Inositol-1… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O59523
Elsewhere: RCSB PDB 1VDW · PDBe 1VDW · UniProt O59523

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