MolNFT v1 · #25000 · protein

Semliki forest virus capsid protein (crystal form II)

1VCQ: “Semliki forest virus capsid protein (crystal form II)”. X-ray diffraction, 1 pocket (best druggability 0.54). MolNFT v1 #25000 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1VCQ
Type: protein
Length: 298 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Semliki forest virus capsid protein
UniProt: P03315
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Semliki forest virus capsid protein	protein	149	7% helix, 46% strand	P03315

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	115	0.54	0.83	17	empty

Interfaces

1 interface between chains.

A–B · 376 Å² buried · 16 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1VCQ · Semliki forest virus capsid protein (crystal form II) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03315
Elsewhere: RCSB PDB 1VCQ · PDBe 1VCQ · UniProt P03315

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