MolNFT v1 · #24757 · protein

The crystal structure of the active form chitosanase from bacillus sp. K17 at PH6.4

1V5D: “The crystal structure of the active form chitosanase from bacillus sp. K17 at PH6.4”. X-ray diffraction, 1 ligand (PIN), 2 pockets (best druggability 0.63). MolNFT v1 #24757 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1V5D
Type: protein
Length: 772 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chitosanase
EC: 3.2.1.132
Ligands: PIN
Pockets: 2 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Chitosanase (EC 3.2.1.132)	protein	386	50% helix, 6% strand	—

Ligands and binding sites

PIN · Piperazine-N,N'-bis(2-ethanesulfonic acid) · ligand · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	411	0.63	0.78	35	empty
2	391	0.62	0.77	33	empty

Compared structures

1V5D · The crystal structure of the active form chitosanase from Bacillus sp. K17 at pH6.4 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1V5D · PDBe 1V5D

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