MolNFT v1 · #24603 · protein
Crystal structure of THRE11VAL mutant of the nerve tissue mini-hemoglobin from the nemertean worm cerebratulus lacteus
1V07 · Neural hemoglobin: “Crystal structure of THRE11VAL mutant of the nerve tissue mini-hemoglobin from the nemertean worm…”. X-ray diffraction, 3 ligands (HEM, OXY, SO4), 1 pocket (best druggability 0.69). MolNFT v1 #24603 on GenesisL1…
- PDB
- 1V07
- Type
- protein
- Length
- 110 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Neural hemoglobin
- UniProt
- O76242
- Ligands
- HEM, OXY, SO4
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Neural hemoglobin | protein | 110 | 73% helix, 0% strand | O76242 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- OXY · Oxygen molecule · ion · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 282 | 0.69 | 0.83 | 27 | HEM, OXY |
Compared structures
- 1V07 · CRYSTAL STRUCTURE OF ThrE11Val mutant of THE NERVE TISSUE MINI-HEMOGLOBIN FROM THE… · the same entry in another collection · chain A against A, TM-score 1.00
- O76242 · AlphaFold monomer V2.0 prediction for neural hemoglobin (O76242) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O76242
- Elsewhere: RCSB PDB 1V07 · PDBe 1V07 · UniProt O76242
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