MolNFT v1 · #24555 · protein
Mutated B-glucosidase a from paenibacillus polymyxa showing increased stability
1UYQ · Beta-glucosidase a: “Mutated B-glucosidase a from paenibacillus polymyxa showing increased stability”. X-ray diffraction, 2 ligands (G2F, NFG), 1 pocket (best druggability 0.69). MolNFT v1 #24555 on GenesisL1: 3D structure, binding…
- PDB
- 1UYQ
- Type
- protein
- Length
- 447 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-glucosidase a
- EC
- 3.2.1.21
- UniProt
- P22073
- Ligands
- G2F, NFG
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-glucosidase a (EC 3.2.1.21) | protein | 447 | 43% helix, 18% strand | P22073 |
Ligands and binding sites
- G2F · 2-deoxy-2-fluoro-alpha-D-glucopyranose · ligand · chains A
- NFG · 2,4-dinitrophenyl 2-deoxy-2-fluoro-beta-D-glucopyranoside · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 491 | 0.69 | 0.79 | 43 | G2F |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1UYQ · mutated b-glucosidase A from Paenibacillus polymyxa showing increased stability · the same entry in another collection · chain A against A, TM-score 1.00
- P22073 · AlphaFold monomer V2.0 prediction for beta-glucosidase a (P22073) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22073
- Elsewhere: RCSB PDB 1UYQ · PDBe 1UYQ · UniProt P22073
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