MolNFT v1 · #24518 · protein

The crystal structure of the yden gene product from B. subtilis

1UXO · Putative hydrolase yden: “The crystal structure of the yden gene product from B. subtilis”. X-ray diffraction, 1 pocket (best druggability 0.37). MolNFT v1 #24518 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1UXO
Type: protein
Length: 186 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative hydrolase yden
EC: 3.-.-.-
UniProt: P96671
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative hydrolase yden (EC 3.-.-.-)	protein	186	38% helix, 20% strand	P96671

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.37	0.79	13	empty

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

1UXO · The crystal structure of the ydeN gene product from B. subtilis · the same entry in another collection · chain A against A, TM-score 1.00
P96671 · AlphaFold monomer V2.0 prediction for putative hydrolase yden (P96671) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P96671
Elsewhere: RCSB PDB 1UXO · PDBe 1UXO · UniProt P96671

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