MolNFT v1 · #24441 · protein

Lipid binding in rice nonspecific lipid transfer protein-1 complexes from oryza sativa

1UVC: “Lipid binding in rice nonspecific lipid transfer protein-1 complexes from oryza sativa”. X-ray diffraction, 1 ligand (STE), 1 pocket (best druggability 0.86). MolNFT v1 #24441 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1UVC
Type: protein
Length: 182 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nonspecific lipid transfer protein
UniProt: P23096
Ligands: STE
Pockets: 1 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 58% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Nonspecific lipid transfer protein	protein	91	58% helix, 1% strand	P23096

Ligands and binding sites

STE · Stearic acid · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	478	0.86	0.92	68	STE

Interfaces

1 interface between chains.

A–B · 554 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

1UVC · Lipid Binding in Rice Nonspecific Lipid Transfer Protein-1 Complexes from Oryza sativa · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P23096
Elsewhere: RCSB PDB 1UVC · PDBe 1UVC · UniProt P23096

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