MolNFT v1 · #24337 · protein
Native XYLANASE10C from cellvibrio japonicus
1US3 · Endo-beta-1,4-xylanase precursor: “Native XYLANASE10C from cellvibrio japonicus”. X-ray diffraction, 1 ligand (NA), 4 pockets (best druggability 0.59). MolNFT v1 #24337 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1US3
- Type
- protein
- Length
- 482 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-beta-1,4-xylanase precursor
- EC
- 3.2.1.8
- UniProt
- Q59675
- Ligands
- NA
- Pockets
- 4 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-beta-1,4-xylanase precursor (EC 3.2.1.8) | protein | 482 | 32% helix, 24% strand | Q59675 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.59 | 0.79 | 44 | GOL, TRS |
| 2 | 162 | 0.46 | 0.76 | 25 | empty |
| 3 | 59 | 0.42 | 0.81 | 17 | empty |
| 4 | 53 | 0.26 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59675
- Elsewhere: RCSB PDB 1US3 · PDBe 1US3 · UniProt Q59675
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