MolNFT v1 · #24301 · protein

Xylanase XYN10B mutant (E262S) from cellvibrio mixtus in complex with arabinofuranose alpha 1,3 linked to xylotriose

1UR2 · Endoxylanase: “Xylanase XYN10B mutant (E262S) from cellvibrio mixtus in complex with arabinofuranose alpha 1,3 linked to…”. X-ray diffraction, 5 ligands (XYP, XYS, AHR), 1 pocket (best druggability 0.60). MolNFT v1 #24301 on…

PDB: 1UR2
Type: protein
Length: 351 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endoxylanase
EC: 3.2.1.8
UniProt: O68541
Ligands: XYP, XYS, AHR, MG, CL
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endoxylanase (EC 3.2.1.8)	protein	351	43% helix, 18% strand	O68541

Ligands and binding sites

XYP · beta-D-xylopyranose · sugar · 5 copies · chains A
XYS · alpha-D-xylopyranose · sugar · chains A
AHR · alpha-L-arabinofuranose · sugar · chains A
MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	301	0.60	0.78	37	XYP, XYS

Compared structures

1UR2 · Xylanase Xyn10B mutant (E262S) from Cellvibrio mixtus in complex with arabinofuranose… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O68541
Elsewhere: RCSB PDB 1UR2 · PDBe 1UR2 · UniProt O68541

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