MolNFT v1 · #24265 · protein
HIV-1 myristoylated matrix
1UPH · Gag polyprotein: “HIV-1 myristoylated matrix”. Solution nmr, 1 ligand (MYR), 1 pocket (best druggability 0.33). MolNFT v1 #24265 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1UPH
- Type
- protein
- Length
- 131 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag polyprotein
- UniProt
- P12493
- Ligands
- MYR
- Pockets
- 1 · best druggability 0.33
Structure
solution nmr · 1 distinct chain · 63% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gag polyprotein | protein | 131 | 63% helix, 2% strand | P12493 |
Ligands and binding sites
- MYR · Myristic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.33 | 0.77 | 10 | empty |
Modifications
Observed in the structure: 1 lipid (myristoylation).
Compared structures
- 1UPH · HIV-1 Myristoylated Matrix · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12493
- Elsewhere: RCSB PDB 1UPH · PDBe 1UPH · UniProt P12493
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