MolNFT v1 · #24178 · protein
Structure determination of umud' by mad phasing of the selenomethionyl protein
1UMU: “Structure determination of umud' by mad phasing of the selenomethionyl protein”. X-ray diffraction, 3 pockets (best druggability 0.41). MolNFT v1 #24178 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1UMU
- Type
- protein
- Length
- 211 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Umud'
- EC
- 3.4.21.-
- UniProt
- P04153
- Pockets
- 3 · best druggability 0.41
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Umud' (EC 3.4.21.-) | protein | 105 | 10% helix, 38% strand | P04153 |
| B | Umud' (EC 3.4.21.-) | protein | 106 | 10% helix, 38% strand | P04153 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.41 | 0.78 | 21 | empty |
| 2 | 89 | 0.39 | 0.77 | 19 | empty |
| 3 | 50 | 0.29 | 0.75 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 539 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 1UMU · Structure determination of umud' by mad phasing of the selenomethionyl protein · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04153
- Elsewhere: RCSB PDB 1UMU · PDBe 1UMU · UniProt P04153
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