MolNFT v1 · #24168 · protein
Crystal structure of pyrococcus horikoshii cuta in the presence of 3M guanidine hydrochloride
1UMJ · Periplasmic divalent cation tolerance protein cuta: “Crystal structure of pyrococcus horikoshii cuta in the presence of 3M guanidine hydrochloride”. X-ray diffraction, 1 ligand (GAI), 1 pocket (best druggability 0.50). MolNFT v1…
- PDB
- 1UMJ
- Type
- protein
- Length
- 202 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic divalent cation tolerance protein cuta
- UniProt
- O58720
- Ligands
- GAI
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Periplasmic divalent cation tolerance protein cuta | protein | 101 | 37% helix, 36% strand | O58720 |
Ligands and binding sites
- GAI · Guanidine · ligand · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.50 | 0.82 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 204 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1UMJ · Crystal structure of Pyrococcus horikoshii CutA in the presence of 3M guanidine… · the same entry in another collection · chain A against A, TM-score 1.00
- O58720 · AlphaFold monomer V2.0 prediction for divalent-cation tolerance protein cuta (O58720) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58720
- Elsewhere: RCSB PDB 1UMJ · PDBe 1UMJ · UniProt O58720
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