MolNFT v1 · #24135 · protein
Crystal structure of pokeweed lectin-C
1ULK: “Crystal structure of pokeweed lectin-C”. X-ray diffraction, 3 pockets (best druggability 0.51). MolNFT v1 #24135 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1ULK
- Type
- protein
- Length
- 252 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lectin-C
- UniProt
- Q9AYP9
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lectin-C | protein | 126 | 21% helix, 20% strand | Q9AYP9 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.51 | 0.84 | 17 | empty |
| 2 | 212 | 0.48 | 0.75 | 35 | empty |
| 3 | 74 | 0.38 | 0.78 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1291 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 24 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AYP9
- Elsewhere: RCSB PDB 1ULK · PDBe 1ULK · UniProt Q9AYP9
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