MolNFT v1 · #24056 · protein

Crystal structure of STAM2 SH3 domain in complex with a ubpy-derived peptide

1UJ0 · Signal transducing adaptor molecule (SH3 domain and itam…: “Crystal structure of STAM2 SH3 domain in complex with a ubpy-derived peptide”. X-ray diffraction, 1 ligand (PO4). MolNFT v1 #24056 on GenesisL1: 3D structure, binding sites…

PDB: 1UJ0
Type: protein
Length: 67 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Signal transducing adaptor molecule (SH3 domain and itam motif) 2; Deubiquitinating…
UniProt: O88811
Ligands: PO4

Structure

x-ray diffraction · 2 distinct chains · 9% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Signal transducing adaptor molecule (SH3 domain and itam motif) 2	protein	58	5% helix, 48% strand	O88811
B	Deubiquitinating enzyme ubpy	protein	9	33% helix, 0% strand	—

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 448 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

1UJ0 · Crystal Structure of STAM2 SH3 domain in complex with a UBPY-derived peptide · the same entry in another collection · chain A against A, TM-score 1.00
O88811 · AlphaFold monomer V2.0 prediction for signal transducing adapter molecule 2 (O88811) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O88811
Elsewhere: RCSB PDB 1UJ0 · PDBe 1UJ0 · UniProt O88811

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