MolNFT v1 · #24041 · protein

Crystal structure of soybean beta-conglycinin alpha prime homotrimer

1UIK · Alpha prime subunit of beta-conglycinin: “Crystal structure of soybean beta-conglycinin alpha prime homotrimer”. X-ray diffraction, 1 ligand (MG), 10 pockets (best druggability 0.72). MolNFT v1 #24041 on GenesisL1: 3D structure…

PDB: 1UIK
Type: protein
Length: 1,091 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha prime subunit of beta-conglycinin
UniProt: Q7XXT2
Ligands: MG
Pockets: 10 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 18% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	Alpha prime subunit of beta-conglycinin	protein	364	19% helix, 42% strand	Q7XXT2
B	Alpha prime subunit of beta-conglycinin	protein	363	17% helix, 42% strand	Q7XXT2

Ligands and binding sites

MG · Magnesium ion · metal · 3 copies · chains A, B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.72	0.99	15	empty
2	920	0.70	0.75	86	empty
3	51	0.69	0.97	16	empty
4	524	0.63	0.76	67	empty
5	109	0.44	0.77	21	empty

Interfaces

3 interfaces between chains.

A–C · 2542 Å² buried · 25 hydrogen bonds · protein-protein
B–C · 2541 Å² buried · 29 hydrogen bonds · protein-protein
A–B · 2526 Å² buried · 29 hydrogen bonds · protein-protein

Compared structures

1UIK · Crystal structure of soybean beta-conglycinin alpha prime homotrimer · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7XXT2
Elsewhere: RCSB PDB 1UIK · PDBe 1UIK · UniProt Q7XXT2

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